The former Brazilian leader has been detained after authorities concluded he posed a serious risk of fleeing while under home confinement.
The one-time leader was sentenced of plotting a military coup in the ninth month and sentenced more than over two decades in incarceration, but he continued under house arrest pending court reviews.
Top Judicial Official Justice Moraes said the decision to arrest the septuagenarian politician was a preventative measure after fresh information came to light.
This encompassed trying to remove his tracking device and a call for a public vigil that could "allow for a chance to flee".
In a paperwork permitting the custody, Justice Moraes said data from the centre monitoring the former president's confinement suggested the ex-president's "intention to break the electronic ankle bracelet to secure accomplishment in his escape.
This, it said, would be "facilitated by the confusion caused by the demonstration called by his son.
His son, Flávio, who serves as a senator, called for a assembly of his supporters near the former president's residence to take place on Saturday night.
The senator wrote on online platforms on last Friday: Will you battle for your homeland, or observe everything from your smartphone there on your couch? I urge you to battle with us."
He said the gathering would be so backers could "pray for his well-being and for the restoration of democratic rule in our nation."
Part of Justice Moraes's decision was the chance of Bolsonaro's move to foreign missions near the home, considering that the inquiries revealed a background of planning to seek refuge through a consular facility", a declaration said.
The court filing underscores that the American diplomatic mission in the capital, Brasilia, is situated around 13km from Bolsonaro's home.
Bolsonaro's legal woes have generated frustration from fellow populist conservative US President Donald Trump, prompting him to implement a 50% tariff on goods coming from Brazil.
Bolsonaro is being held in a national police facility in the capital and will experience a custody hearing on the next day.
It was only on Friday that the former president's lawyers asked the Supreme Court to permit him to fulfill his full incarceration period under home confinement, with digital surveillance.
They also asked that he be permitted to exit his dwelling for healthcare, saying he demanded ongoing care for pulmonary infections and other illnesses.
He was determined responsible of leading a conspiracy aimed at retaining his authority after he was defeated in the 2022 election to his political opponent, Lula.
Supreme Court justices said that he had knowledge of a plot which included plans to murder Lula and his running partner, Geraldo Alckmin, and to detain and kill the presiding judge - the High Court judge who has been managing his judicial proceedings.
The scheme was stopped because it couldn't obtain the endorsement of the army and air force commanders. Lula was took office without incident on January 1st, 2023.
But a seven days after, on January 8th, numerous Bolsonaro supporters invaded and destroyed official structures in the capital, the capital city.
The police intervened and around 1,500 people were taken into custody.
The justices found that the protesters had been provoked by the former president whose plan, they said, was for the national armed forces to take action, restore order and return him to office.
At the moment, the legal team called the over 27-year sentence unreasonably severe".
He was also prohibited from running for public office until 2060 - eight years later after the completion of his term.
The one-time head of state called the legal proceedings a political persecution and said it was intended to stop him participating in the next presidential race.